- CSE200 - Computability and Complexity (Revised Fall 2002)
- CSE201A - Advanced Complexity (New Fall 2002)
- CSE202 - Algorithm Design and Analysis (Revised Fall 2002)
- CSE203A - Advanced Algorithms (New Fall 2002)
- CSE205A - Logic in Computer Science (Formerly CSE 208D - Revised Fall 2002)
- CSE206A - Lattice Algorithms and Applications (Formerly CSE 207C - Revised Fall 2002)
- CSE207 - Modern Cryptography (Revised Fall 2002)
- CSE208 - Advanced Cryptography (New Fall 2002)
- CSE209A - Topics/Seminar in Algorithms, Complexity and Logic (New Fall 2002)
- CSE209B - Topics/Seminar in Cryptography (New Fall 2002)
- CSE210 - Principles of Software Engineering (Formerly CSE 264A)
- CSE211 - Software Testing and Analysis
- CSE216 - Interaction Design Research (Cross-listed CSE 216/COGS 230 - New Fall 2014)
- CSE218 - Advanced Topics in Software Engineering
- CSE219 - Design at Large (Cross-listed CSE 219/COGS 229 - New Fall 2014)
- CSE221 - Operating Systems (Revised Fall 2002)
- CSE222A - Computer Communication Networks (Formerly CSE 222 - Revised Fall 2002)
- CSE222B - Internet Algorithmics (Formerly CSE 228H - Revised Fall 2002)
- CSE223A - Principles of Distributed Computing (Formerly CSE 223 - Fall 2003)
- CSE223B - Distributed Computing and Systems (New Fall 2003)
- CSE227 - Computer Security (Revised Fall 2002)
- CSE229A - Topics/Seminar in Computer Systems (New Fall 2002)
- CSE229B - Topics/Seminar in Networks and Communication (New Fall 2002)
- CSE229C - Topics/Seminar in Computer Security (New Fall 2002)
- CSE230 - Principles of Programming Languages (Formerly CSE 273)
- CSE231 - Advanced Compiler Design (Formerly CSE 264C)
- CSE232 - Principles of Database Systems (Formerly CSE 264D)
- CSE232B - Database System Implementation
- CSE233 - Database Theory (Revised Fall 2002)
- CSE237A - Introduction to Embedded Computing (New Spring 2004)
- CSE237B - Software for Embedded Systems (New Fall 2004)
- CSE237C - Validation and Testing of Embedded Systems (New Fall 2004)
- CSE237D - Design Automation and Prototyping for Embedded Systems (New Fall 2004)
- CSE239A - Topics/Seminar in Databases
- CSE240A - Principles in Computer Architecture (Formerly CSE 240 - Revised Fall 2002)
- CSE240B - Parallel Computer Architecture (Revised Fall 2007)
- CSE240C - Advanced Microarchitecture (New Fall 2007)
- CSE240D - Application Specific Processors (New Fall 2007)
- CSE241A - VLSI Integration of Computing Circuitry (Cross-listed CSE 241A/ECE 260B - Revised Winter 2005)
- CSE242A - Integrated Circuit Layout Automation (New Fall 2002)
- CSE243A - Introduction to Synthesis Methodologies in VLSI CAD (Revised Winter 2014)
- CSE244A - VLSI Test (Revised Winter 2014)
- CSE245 - Computer Aided Circuit Simulation and Verification (New Fall 2002)
- CSE247 - Application Specific and Reconfigurable Computer Architecture (New Fall 2002)
- CSE248 - Algorithmic and Optimization Foundations for VLSI CAD (New Fall 2002)
- CSE249A - Topics/Seminar in Computer Architecture (New Fall 2002)
- CSE249B - Topics/Seminar in VLSI (New Fall 2002)
- CSE249C - Topics/Seminar in CAD (New Fall 2002)
- CSE250A - Principles of Artificial Intelligence: Probabilistic Reasoning and Learning (Formerly CSE250A - Artificial Intelligence: Search and Reasoning - Revised Spring 2013)
- CSE250B - Principles of Artificial Intelligence: Learning Algorithms (Formerly CSE 250B - Artificial Intelligence: Learning)
- CSE250C - Machine Learning Theory (New Spring 2013)
- CSE252A - Computer Vision I (New Winter 2004)
- CSE252B - Computer Vision II (New Spring 2004)
- CSE252C - Selected Topics in Vision and Learning
- CSE253 - Neural Networks/Pattern Recognition (Reinstated Fall 2015)
- CSE254 - Statistical Learning
- CSE255 - Data Mining and Predictive Analytics (New Spring 2013)
- CSE256 - Statistical Natural Language Processing
- CSE258 - Recommender Systems & Web Mining (New Winter 2016) (New Winter 2016)
- CSE258A - Cognitive Modeling (Formerly CSE 281P)
- CSE259 - Seminar in Artificial Intelligence
- CSE259C - Topics/Seminar in Machine Learning
- CSE260 - Parallel Computation (Formerly CSE 274A)
- CSE262 - System Support for Applications of Parallel Computation
- CSE272 - Advanced Image Synthesis (Revised Winter 2008)
- CSE274 - Selected Topics in Graphics
- CSE280A - Algorithms in Computational Biology (Formerly CSE 206B - Revised Fall 2006)
- CSE282 - Bioinformatics II: Sequence and Structure Analysis - Methods and Applications (Cross-listed CSE 282/BENG 202 - Renumbered Fall 2005 (Formerly BENG 202/CSE 257A))
- CSE283 - Bioinformatics III: Functional Genomics (Cross-listed CSE 283/BENG 203 - New Fall 2005)
- CSE290 - Seminar in Computer Science and Engineering (Formerly CSE 280A)
- CSE291 - Topics in Computer Science and Engineering (Formerly CSE 281A)
- CSE292 - Faculty Research Seminar (Formerly CSE 282)
- CSE293 - Special Project in Computer Science and Engineering
- CSE294 - Research Meeting is CSE
- CSE298 - M.S. Thesis Research (Revised Fall 2002)
- CSE299 - Ph.D. Dissertation Research (Revised Fall 2002)
- CSE500 - Teaching Assistantship (Formerly CSE 501 - Revised Fall 2003)
- CSE599 - Teaching Methods in Computer Science (New Fall 2002)